ISPAM Working Group Chair Presentation Book
Challenges
• Unique protein and peptide selections with different digestion conditions – Perform protein ID for allergens: Trypsin; chymotrypsin; species selected based on the list highlighted by The Codex Alimentarius. – Search against database and select unique proteins/peptides. Goal : • Detection of two proteins each species (if available), 3‐4 peptides each protein, and 3‐4 MRM transitions each peptide. • MRM transition selections with consideration on sensitivity and few/no interferences from the food matrix. • MRM transition selections made with consideration of potential modification during food processing (cooking, baking, fermenting etc. )and storage (i.e. MRMs must be detectable in raw and processed food) • Sample clean up: lipids removal – Try different solvents (ex. hexane, etc) • Protein extraction and digestion optimization – Try different denature conditions: (ex. heat, urea, OGS, guanidine). – Final combined mixture of denature reagent. – Must be simple for sample preparation and easy to reproduce.
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