SPADA Docs

intervening lineage (i.e., intermediate culture). Each of these cultures should be linked to its 132 predecessor via a documented production method. The performer should specifically identify the 133 starting cultures, culture producer, lot number, production date, and production method of each 134 culture in the passage history. With respect to the production method, the performer should 135 describe the materials and methods used to derive the referenced culture from its predecessor in 136 the lineage declaration. If the current culture is the first in the chain, the production method 137 should clearly describe the clinical, environmental, or laboratory origin of the culture and the 138 method used to propagate the traceable culture from that origin. 139 141 test results address the relatedness of the test and index cultures. Orthogonal testing relies on 142 multiple analytic techniques to compare one culture to another. Cultures can be compared with 143 respect to morphology; genotypic and phenotypic properties; metabolic, immunological, and 144 molecular features; molecular functions; and virulence. However, the quality of microbial 145 verification and confidence associated with it ultimately depends on the number, type, and 146 diversity of applied assays. Culture producers should strive for more comprehensive approaches 147 to orthogonal testing. Minimally, orthogonal testing should include a mix of genotypic and 148 phenotypic assays. Table 1 provides examples of various tests and the largely orthogonal 149 categories to which they apply. 5.1.2 Orthogonal Test Results 140 It is also important that the culture verification statement describe how available orthogonal

150 151

Table 1. Examples of orthogonal assays

152

Category

Example assays

Morphology

Colony plating, Gram stain

Next generation sequencing, RFLP a , MLVA b , MLST c Fatty acid-based microbial identification, Mass spectrometry

Genotypic properties Molecular properties

7

Made with FlippingBook - professional solution for displaying marketing and sales documents online