August 30, 2016 SPADA Meeting Book
Inclusivity Panel
Complementary Set: Exclusivity Panel - near neighbor ( Orthopoxviruses ) Species Strain Ectromelia virus Moscow Monkeypox virus 79-0266 Monkeypox virus 79-0005 Camelpoxvirus LLC Camelpoxvirus V78-I-903
Species
Strain
Sample Crude Crude Crude Crude Crude Crude Crude Crude
102 103
Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus Variola virus
66-39 7124 7125 72-119 73-175 77-1605 Bombay Congo Eth-17 Harper Harvey Higgins Hinton
Crust Crude Crude Crude Crude Crude Crude Crude Crude Crude Pure Crude Crude Crude Crude Crude Pure Crude Crust Crude Crude Crude Crude Crude Crude Crude Crude Crude Crude
Brazil-Garcia
Brighton
Cowpoxvirus Taterapoxvirus Vaccinia virus Vaccinia virus Vaccinia virus Vaccinia virus Vaccinia virus Skunkpovirus
(Gerbilpox)
Lister VTH Wyeth
Heidelberg
WYH pGS62-9-v1-1-1
Horn Horn
Rabbitpoxvirus
K1629
Kali Mathu Kembula
Exclusivity Panel - other rash-causing illnesses Species Strain V i ll Z t Vi W b t ar ce a os er rus e s er
Minnesota 124
MS Lee Nepal
HFEM conorii
Herpes Simplex Virus-1
New Dehli
Nigeria Kuclano
Rickettsia
Nur Islam Rumbec Shahzamon Solaiman
Exclusivity Panel - other negatives Species Strain Myxoma
Stillwell V68-59 V70-222 V70-228
Human tissue culture cells
Sup-T
Variolator-4
Monkey kidney tissue culture cells
BSC-40
Yamada
Validated diagnostic real- time PCR assays Variola virus : Diagnostic Creation and Validation Target multiple regions of the genome Target sequences specific to Variola virus Cowpox virus sequences acquired after validation Exhibit extensive phylogenetic diversity Contain certain regions
previously thought to be specific to Variola virus • Now assays predicted to
cross-react with Cowpox virus
D. Carroll, et. al PLoS One. 2011;6(8):e23086
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