BPS Program Book 2014

1401-P os B oard #B131 MOLECULAR DYNAMIC STUDIES OF Z[WC] DNA ANDTHE BTO Z-DNATRANSITION. Michael G. Lerner, Jinhee Kim , Alexander K. Seewald 1402-P os B oard #B132 NANOCONFINED CIRCULAR DNA. Mohammadreza Alizadehheidari , Erik Werner, Charleston Noble, Lena Nyberg, Joachim Fritzsche, Bernhard Mehlig, Jonas Tegenfeldt, Tobias Ambjörnsson, Fredrik Persson, Fredrik Westerlund 1403-P os B oard #B133 SIMULATIONS OF CROSSLINKING EFFICIENCY AND SEQUENCE SPECIFICITY OF NITROGEN MUSTARD ANTICANCER DRUGS. Moon Joon Park , Michael E. Colvin 1404-P os B oard #B134 CHARACTERIZATION OF DNA-CTAB AGGREGATES. Kathleen Westervelt, Pamela M. St. John 1405-P os B oard #B135 SINGLE MOLECULE STUDIES OF SEQUENCE DEPENDENCE ELASTICITY IN DNA. Julia T. Bourg , Krishnan Raghunathan, Alan Kandinov, Joshua N. Milstein, Jens-Christian Meiners 1406-P os B oard #B136 MECHANICAL PROPERTIES OF DNA-LIKE POLYMERS. Justin P. Peters , L. James Maher III 1407-P os B oard #B137 INVESTIGATING THE DNA FOLDING MECHANICS OF PROTAMINE. Ji Hoon Lee , Robert D. Schwab, Ashley R. Carter 1408-P os B oard #B138 MEASURING ENERGETICS OF SHARP DNA BENDING FROM BREAKAGE KINETICS OF SMALL DNA LOOPS. Tung T. Le , Harold D. Kim 1409-P os B oard #B139 POLYETHYLENEIMINE-DNA INTERACTIONS. T J Thomas , Sripriya Venkiteswaran 1410-P os B oard #B140 ON THE CONTINUITY OF STATES BETWEEN DNA-ORDERING TRANSITIONS IN MONO- AND MULTI-VALENT SALT SOLUTIONS. Selcuk Yasar , Rudolf Podgornik, Adrian Parsegian 1411-P os B oard #B141 ON THE ORIGIN OF OVERSTRETCHING TRANSITIONS IN SINGLE- AND DOUBLE-STRANDED NUCLEIC ACIDS. Zackary N. Scholl , Mahir Rabbi, David Lee, Laura Manson, Hanna S-Gracz, Piotr E. Marszalek 1412-P os B oard #B142 STABILITY OF DNA IN HYDRATED IONIC LIQUIDS: EFFECT OF SOLVENT NANOSTRUCTURING. Debostuti Choshdastidar, Aneesh Chandran, Sanjib Senapati 1413-P os B oard #B143 SUPERCOIL DYNAMICS ALONG STRETCHED DNA BY BROWNIAN DYNAMICS. Todd D. Lillian , David Bell, Justin Polk 1414-P os B oard #B144 MODELING THE RELAXATION OF DNA SUPERCOILS. Ikenna D. Ivenso , Todd Lillian 1415-P os B oard #B145 PERSISTENCE LENGTH OF SINGLE STRANDED DNA: EFFECT OF LENGTH, SEQUENCE AND SURFACE. Ho Shin Kim, Yaroslava G. Yingling

1390-P os B oard #B120 SIMULTANEOUS IMAGING OF LEADING- AND LAGGING-STRAND SYNTHESIS REVEALS DISTINCT OPERATIONAL MODES OF SINGLE REPLICATION MACHINES. Karl E. Duderstadt , Christiaan M. Punter, Arkadiusz W. Kulczyk, Charles C. Richardson, Antoine M. van Oijen 1391-P os B oard #B121 DOMAIN ARCHITECTURE OF RECQ HELICASE DEFINES MECHANOCHEMICAL LINKAGE VIA MULTIPARTITE INTERACTIONS WITH DNA SUBSTRATE DURING UNWINDING ACTIVITY. Gabor Harami, Yeonee Seol, Junghoon In, Kata Sarlos, Yuze Sun, Mate Martina, Keir C. Neuman, Mihaly Kovacs 1392-P os B oard #B122 VIZUALIZING REPLIICATION RESTART PROCESS IN VIVO WITH SINGLE-MOLECULE SENSITIVITY. Sarah M. Mangiameli , Paul A. Wiggins, Houra Merrikh, Chris Merrikh 1393-P os B oard #B123 COMPLEX TEMPERATURE DEPENDENT EQUILIBRIA DICTATE DNA POLYMERASE EXCHANGE PROCESSES DURING SYNTHESIS. Michael A. Trakselis , Robert J. Bauer, Hsiang-Kai Lin, Linda Jen-Jacobson 1394-P os B oard #B124 MECHANISTIC STUDIES OF DNA-PROTEIN INTERACTIONS IN BACTERIOPHAGE T4 DNA REPLICATION COMPLEXES AT SINGLE-BASE RESOLUTION. Davis Jose , Steven E. Weitzel, Walter A. Baase, Peter H. von Hippel 1395-P os B oard #B125 A NOVEL FRET-BASED STRUCTURE OF DNA POLYMERASE COMPLEXED WITH KINKED GAPPED-DNA. Timothy D. Craggs , Marko Sustarsic, Johannes Hohlbein, Andrew Cuthbert, Nicholas Taylor, Geraint Evans, Achillefs N. Kapanidis 1396-P os B oard #B126 TIME-RESOLVED PLASMID COUNTING BY WAY OF TRANSCRIPTION FACTOR SEQUESTRATION. Robert Brewster , Franz Weinert, Rob Phillips 1397-P os B oard #B127 CONCENTRATION-DEPENDENT EXCHANGE OF REPLICATION PROTEIN A ON SINGLE-STRANDED DNA REVEALED BY SINGLE-MOLECULE IMAGING. Bryan Gibb , Ling F. Ye, Stephanie C. Gergoudis, YoungHo Kwon, Hengyao Niu, Patrick Sung, Eric C. Greene DNA Structure and Dynamics II (Boards #B128-#B158) 1398-P os B oard #B128 THE EFFECTS OF BASE STACKING ON DNA FLEXIBILITY. Lauren S. Mogil , Justin P. Peters, Jim Maher 1399-P os B oard #B129 CONFORMATIONAL TRANSITION OF NANOSLIT CONFINED DNA AT LOW IONIC STRENGTHS. JinYong Lee , Kyubong Jo 1400-P os B oard #B130 PROBING SEQUENCE AND TOPOLOGICAL SPECIFICITY IN THE BINDING OF TETRA(METHYLPYRIDYL)PORPHINES TO DNAS. Stephen A. Winkle , Jennifer Barretta, Diane Edgar, Raul Castillo, Olga Roman, Roxana Roque, Jessica Millar, Maria Ballester

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Biophysical Society 58 th Annual Meeting, San Francisco, California