Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations - September 10-14, 2014, Istanbul, Turkey - page 105

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Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery Poster Session I
46-POS
Board 46
Multi-layered, Iterative Protocols for Quantum Chemical Calculations
Seyit Kale
1
, Benoit Roux
2
, Jonathan Weare
3
, Aaron Dinner
1,4
.
1
University of Chicago, Chicago, IL, USA,
2
University of Chicago, Chicago, IL, USA,
3
University of Chicago, Chicago, IL, USA,
4
University of Chicago, Chicago, IL, USA.
A common strategy in quantum chemical calculations is to start by modeling a system with a low
level of theory and to progress to the desired (high) level of theory. While this seems intuitively
reasonable, there is no formal reason that such a sequence is guaranteed to converge to the
optimum for the desired level of theory. In fact, in cases in which the low and high levels of
theory favor very different solutions, this approach could lead to local traps and slow down
convergence. Here, we propose a theoretical framework for how one force field can be used to
precondition another, so as to seamlessly accelerate convergence of the latter. We demonstrate
this idea by applying it to geometry optimization and reaction path discovery for reactions of
chemical and biological significance (hydrogen bond formation, proton transfer, Claisen
rearragement, and phosphate hydrolysis). Speedups of up to 3-5 fold are obtained.
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