110
Biophysical Society 58
th
Annual Meeting, San Francisco, California
2025-P
os
B
oard
#B755
RADIOLUMINESCENCE MICROSCOPY: MEASURING THE
HETEROGENEOUS UPTAKE OF RADIOTRACERS IN SINGLE
LIVING CELLS.
Silvan C. Türkcan
, Guillem Pratx
2026-P
os
B
oard
#B756
QUANTITATIVE STORM USING ORGANIC DYES.
Veronica Pessino
, Wei Qiang Ong, Bo Huang
2027-P
os
B
oard
#B757
MN
2+
INDUCED TRIPLET BLINKING AND PHOTOBLEACHING
OF SINGLE MOLECULE CYANINE DYES.
Monika A. Ciuba
,
Elana M.S. Stennett, Marcia Levitus
2028-P
os
B
oard
#B758
AN OPTIMIZED AZIMUTHAL SCANNING PLATFORM FOR
TIRF AND HILO IMAGING.
Avtar Singh
, Eli A. Doris, Alex Song,
Warren R. Zipfel
2029-P
os
B
oard
#B759
CATHODOLUMINESCENCE-ACTIVATED IMAGING BY
RESONANCE ENERGY TRANSFER: A NEW APPROACH TO
IMAGINGNANOSCALE AQUEOUS BIODYNAMICS.
Connor G. Bischak
, David M. Kaz, Craig L. Hetherington, Jake T. Precht,
Xavier Marti, James D. Clarkson, Carolina Adamo, Darrell G. Schlom,
Ramamoorthy Ramesh, Shaul Aloni, D. Frank Ogletree,
Naomi S. Ginsberg
2030-P
os
B
oard
#B760
PROFILING CANCER CELL INTRINSIC FLUORESCENCE WITH
THE SPECTRAL CAMERA- PHASOR ANALYSIS METHOD.
Michelle A. Digman
, Enrico Gratton, Hongtao Chen
Molecular Dynamics I
(Boards #B761–#B783)
2031-P
os
B
oard
#B761
NUMERICAL LANGEVIN SIMULATIONS: EQUILIBRIUM
DYNAMICS AND NONEQUILIBRIUM THERMODYNAMICS.
David A. Sivak
, John D. Chodera, Gavin E. Crooks
2032-P
os
B
oard
#B762
ATOMISTIC SIMULATIONS OF GEL AND LIQUID
CRYSTALLINE LIPID BILAYERS. Richard Tjörnhammar,
Olle Edholm
2033-P
os
B
oard
#B763
CALCULATIONS OF THE ELECTRIC FIELD IN SOLUTIONS
AND PROTEINS WITH POLARIZABLE FORCE FIELDS.
Stephen D. Fried
, Lee-Ping Wang, Steven G. Boxer, Vijay S. Pande
2034-P
os
B
oard
#B764
FATSLIM: ANALYSIS OF LIPID MEMBRANE MD SIMULATIONS
MADE EASY.
Sebastien Buchoux
2035-P
os
B
oard
#B765
SYSTEMATIC IMPROVEMENT ON THE CLASSICAL
MOLECULAR MODEL OF WATER.
Lee-Ping Wang
,
Teresa Head-Gordon, Jay Ponder, Pengyu Ren, John Chodera,
Peter Eastman, Todd J. Martinez, Vijay S. Pande
2036-P
os
B
oard
#B766
SIMULATIONS OF NANO-SIZED WATER DROPLETS IN THE
EXTERNAL ELECTRIC FIELD.
Jane HyoJin Lee
, Mayya Tokman,
Michael E. Colvin
2037-P
os
B
oard
#B767
RATE CONSTANTS, TIME SCALES, AND FREE ENERGY
LANDSCAPES IN THERMALLY ACTIVATED PROCESSES.
Peter Salamon
, Bjarne Andresen, Anca Segall, Johann Christian Schön
2038-P
os
B
oard
#B768
GNEIMO-FIXMAN: AN ACCURATE TORSIONAL MOLECULAR
DYNAMICS SIMULATION METHOD FOR STUDYING
BIOMOLECULAR DYNAMICS. Saugat Kandel, Adrien B. Larsen,
Jeffrey E. Wagner, Abhinandan Jain,
Nagarajan Vaidehi
2039-P
os
B
oard
#B769
AUTOMATED OPTIMIZATION OF POTENTIAL PARAMETERS.
Michele Di Pierro
, Ron Elber
2040-P
os
B
oard
#B770
HOWMUCH PRE-POLARIZATION IS IDEAL FOR FIXED-CHARGE
MD SIMULATIONS?
Paul S. Nerenberg
, Jonathan K. Steck, David C. Wych
2041-P
os
B
oard
#B771
ADAPTIVE BIASING COMBINED WITH HAMILTONIAN
REPLICA EXCHANGE TO IMPROVE UMBRELLA SAMPLING
FREE ENERGY SIMULATIONS.
Fabian T. Zeller
2042-P
os
B
oard
#B772
ADAPTIVE LAMBDA SQUARE DYNAMICS SIMULATION:
AN EFFICIENT CONFORMATIONAL SAMPLING METHOD FOR
BIOMOLECULES.
Jinzen Ikebe
, Shun Sakuraba, Hidetoshi Kono
2043-P
os
B
oard
#B773
QM/MM SIMULATIONS OF MG AND ZN SOLVATION.
Saleh Riahi
, Christopher N. Rowley
2044-P
os
B
oard
#B774
RELAXATION MODE ANALYSIS FOR A PEPTIDE.
Ayori Mitsutake
2045-P
os
B
oard
#B775
SPACE-TIME CHARACTERISTICS OF THE PROTEIN
THERMODYNAMIC QUANTITIES UNDER THE MOLECULAR
CROWDING CONDITION OF CYTOPLASM IN EXTREMOPHILES:
KIRKWOOD-BUFF APPROACH COMBINEDWITHMOLECULAR
DYNAMICS SIMULATION.
Isseki Yu
2046-P
os
B
oard
#B776
LIFTING CONSTRAINTS IN PROTEIN MOLECULAR
DYNAMICS SIMULATIONS.
Timo Graen
, Helmut Grubmüller
2047-P
os
B
oard
#B777
SIMULTANEOUS COMPUTATION OF DYNAMICAL AND
EQUILIBRIUM INFORMATION USING A WEIGHTED
ENSEMBLE OF TRAJECTORIES.
Ernesto Suarez
, Steven Lettieri,
Metthew C. Zwier, Sundar Raman Subramanian, Lillian T. Chong,
Daniel M. Zuckerman
2048-P
os
B
oard
#B778
INFERRING STRUCTURAL ENSEMBLES FROM NOISY
EXPERIMENTS AND MOLECULAR DYNAMICS: CORRECTING
FORCE FIELD BIAS WITH BAYESIAN ENERGY LANDSCAPE
TILTING.
Kyle Beauchamp
, Vijay Pande, Rhiju Das
2049-P
os
B
oard
#B779
education
travel
awardee
OPTIMIZATIONOF COARSE-GRAINEDWATER-ION INTERACTION
PARAMETERS FOR BIOLOGICAL SIMULATION.
Joseph Fogarty
,
See-Wing Chiu, Eric Jakobsson, Sagar Pandit
2050-P
os
B
oard
#B780
THE BIO3D PACKAGE: NEW INTERACTIVE TOOLS FOR
STRUCTURAL BIOINFORMATICS. Xin-Qiu Yao, Guido Scarabelli,
Lars Skjærven,
Barry J. Grant
2051-P
os
B
oard
#B781
LEARNING ABOUT TRANSITIONS: ADAPTIVE CONTROLS FOR
THE MOLECULAR DYNAMICS DATABASE. Sarana Y. Nutanong,
Yanif Ahmad,
Thomas B. Woolf
, I-Jeng Wang
