175
Biophysical Society 58
th
Annual Meeting, San Francisco, California
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3298-P
os
B
oard
#B26
A MODEL FOR ALLOSTERIC CONTROL OF PORE OPENING
BY SUBSTRATE BINDING IN THE EUTL MICROCOMPARTMENT
SHELL PROTEIN.
Michael C. Thompson
, Sunny Chun, Todd O. Yeates
3299-P
os
B
oard
#B27
COVARIANCE RATION ANALYSIS OF MOLECULAR DYNAMICS
TRAJECTORIES OF HIV-1 REVERSE TRANSCRIPTASE.
James Seckler
, Serdal Kirmizialtin, Kenneth A. Johnson, Alan Grossfield
3300-P
os
B
oard
#B28
SPECTROSCOPIC ANALYSIS OF CHANNELRHODOPSIN AND
ITS CHROMOPHORE.
Vera Muders
, Silke Kerruth,
Victor Lorenz-Fonfria, Joachim Heberle, Ramona Schlesinger
3301-P
os
B
oard
#B29
BORDETELLA PERTUSSIS ADENYLATE CYCLASE TOXIN:
POTENTIAL MODULATOR OF CALMODULIN METAL-BINDING
PROPERTIES.
Tzvia I. Cuperman
, Erich J. Goebel, Huaqun Zhang,
Natosha L. Finley
3302-P
os
B
oard
#B30
IMODS: FAST EXPLORATION OF MACROMOLECULAR
COLLECTIVE MOTIONS. Jose Rámon López-Blanco, Erney Ramirez,
Santiago Garcia,
Pablo Chacon
Protein Design, Prediction, and Evolution
(Boards #B31–#B55)
3303-P
os
B
oard
#B31
RATIONAL STRUCTURE-BASED DESIGN OF PLN MUTANTS TO
OPTIMIZE DEPHOSPHORYLATION AND TUNE SERCA
FUNCTION. Choua Xiong, Adedolapo Ojoawo, Gianluigi Veglia,
Kim N. Ha
3304-P
os
B
oard
#B32
PROTEIN-CHROMOPHORE INTERACTIONS IN GREEN
FLUORESCENT PROTEIN (GFP) STUDIED BY SPLIT PROTEIN
RECONSTITUTION.
Luke M. Oltrogge
, Steven G. Boxer
3305-P
os
B
oard
#B33
SIDE CHAIN ENTROPY IN ENZYMES AND ITS ROLE IN
CATALYSIS.
Asmit Bhowmick
3306-P
os
B
oard
#B34
RATIONALIZING DIRECTED EVOLUTION THROUGH
PROTEIN DYNAMICS.
Saurabh Belsare
3307-P
os
B
oard
#B35
UNDERSTANDING THE STRUCTURAL DETERMINANTS FOR
THE STABILITY OF HUMAN FIBROBLAST GROWTH FACTOR.
Rachael A. Pellegrino
, Rebecca Kerr, T.K.S. Kumar
3308-P
os
B
oard
#B36
IS THERE A BETA-PEPTIDE EQUIVALENT OF THE ALPHA-HE-
LIX?
Carsten Baldauf
, Franziska Schubert, Kevin Pagel, Stephan Warnke,
Mariana Rossi, Mario Salwiczek, Beate Koksch, Gert von Helden,
Volker Blum
3309-P
os
B
oard
#B37
NOVEL COMPUTATIONAL METHODS TO DESIGN PROTEIN-
PROTEIN INTERACTIONS.
Alice Qinhua Zhou
, Corey S. O’Hern,
Lynne Regan
3310-P
os
B
oard
#B38
FROM AMINOMUTASES TO AMMONIA LYASES: A PROTEIN
ENGINEERING STUDY.
Marcelo F. Masman
, Matthew M. Heberling,
Dick B. Janssen
3311-P
os
B
oard
#B39
SIMPLE RULES IMPOSED ON A PRIMITIVE CUBIC LATTICE
ROBUSTLY GENERATE STRUCTURES THAT MIMIC FEATURES
OF REAL PROTEINS. Deniz Turgut, Osman B. Okan, Aravind Rammohan,
Angel E. Garcia,
Rahmi Ozisik
3312-P
os
B
oard
#B40
INFERRING PROTEIN STRUCTURES FROM SPARSE AND
AMBIGUOUS DATA.
Justin L. MacCallum
, Alberto Perez, Kenneth A. Dill
3313-P
os
B
oard
#B41
SIMULATION STUDY OF SOLUBLE TOXIC OLIGOMERIC
STRUCTURES OF AMYLOID-BETA.
Sukanya Sasmal
,
Timothy Balmorez, K. Aurelia Ball, Teresa Head-Gordon
3314-P
os
B
oard
#B42
COMPUTER SIMULATIONS FOR PREDICTING MEMBRANE
PROTEIN STRUCTURES WITH THE REPLICA-EXCHANGE
METHODS AND IMPLICIT MEMBRANE MODEL OF A
RESTRICTED CONFIGURATIONAL SPACE.
Ryo Urano
, Yuko Okamoto
3315-P
os
B
oard
#B43
TOWARD A GLOBAL VIEW OF THE CONFORMATIONAL
LANDSCAPE OF THE HUMAN KINOME.
Daniel L. Parton
,
Diwakar Shukla, Yutong Zhao, Vijay S. Pande, John D. Chodera
3316-P
os
B
oard
#B44
DOCKING BENCHMARK SET OF PROTEIN MODELS.
Ivan Anishchanka
, Petras J. Kundrotas, Alexander V. Tuzikov, Ilya A. Vakser
3317-P
os
B
oard
#B45
STRUCTURAL SIMILARITY INMODELING OF HOMODIMERS.
Petras Kundrotas
, Ilya Vakser, Joël Janin
3318-P
os
B
oard
#B46
THREE-DIMENSIONAL STRUCTURE OF THE 54-KDA SUBUNIT
OF THE CHLOROPLAST SIGNAL RECOGNITION PARTICLE
USING MOLECULAR MODELING.
Rory Henderson
, Mercede Furr,
Srinivas Jayanthi, Alicia Brown, Robyn Goforth, Ralph Henry, T.K.S. Kumar
3319-P
os
B
oard
#B47
A MOLECULAR DYNAMICS SIMULATION STUDY OF OUTER
MEMBRANE PHOSPHOLIPASE A (OMPLA) STRUCTURE AND
DYNAMICS IN AN ASYMMETRIC LIPOPOLYSACCHARIDE
MEMBRANE.
Emilia L. Wu
, Patrick J. Fleming, Jeffery B. Klauda,
Karen G. Fleming, Wonpil Im
3320-P
os
B
oard
#B48
MODULAR PLATFORM FOR BIOMOLECULAR MODELING
AND SIMULATIONS.
Dominik Gront
3321-P
os
B
oard
#B49
A GLOBAL MACHINE LEARNING BASED SCORING FUNCTION
FOR PROTEIN STRUCTURE PREDICTION. Eshel Faraggi,
Andrzej Kloczkowski
3322-P
os
B
oard
#B50
NEW INSIGHTS ON THE MECHANISM OF ACTION OF ICE-
BINDING PROTEINS.
Ran Drori
, Yeliz Celik, Peter L. Davies,
Ido Braslavsky
3323-P
os
B
oard
#B51
CAN A PROTEIN’S EVOLUTIONARY FATE BE PREDICTED
FROM ITS STRUCTURE?
Amy I. Gilson
, Eugene I. Shakhnovich
3324-P
os
B
oard
#B52
PROBING AN ANCIENT PROTEIN’S DYNAMICS WITH
NMR.
Marc S. Hoemberger
, Christopher G. Wilson, Dorothee Kern
