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Biophysical Society 59
th
Annual Meeting, Baltimore, Maryland
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D
A
Y
1171-P
os
B
oard
B122
TENSION-DEPENDENT STABILITY OF TORSIONALLY
CONSTRAINED DNA: MELTING PRECEDES
OVERWINDING.
Graeme A. King
, Erwin J. G. Peterman, Gijs J. L.
Wuite
1172-P
os
B
oard
B123
ESTIMATING PERSISTENCE LENGTH OF DNA FROM
MOLECULAR DYNAMICS SIMULATIONS.
Aleksander V. Drozdetski
, Ramu Anandakrishnan, Alexey Onufriev
1173-P
os
B
oard
B124
DUAL-BEAM FLUORESCENCE CORRELATION
SPECTROSCOPY OF DNA HAIRPIN FOLDING-UNFOLDING
REACTION AT VARIOUS TEMPERATURES AND SALT
CONCENTRATIONS.
Farshad Abdollah-Nia
, Martin Gelfand, Alan
Van Orden
1174-P
os
B
oard
B125
ION BINDING AND ELECTROSTATICS IN CONDENSED DNA
ARRAYS PROBED BY ION COUNTING TECHNIQUES.
Kurt Andresen
, Wei Meng, Abby Bull, Xiangyun Qiu
1175-P
os
B
oard
B126
education
travel awardee
BROWNIAN DYNAMICS STUDY OF DNA SUPERCOIL
RELAXATION.
Ikenna D. Ivenso
, Todd D. Lillian
1176-P
os
B
oard
B127
CHARGE REDISTRIBUTION IN EXCITED STATE
LUMICHROME AND LUMAZINE.
Steven E. Meckel
, David T.
Barnard, Raymond F. Pauszek III, Robert J. Stanley
1177-P
os
B
oard
B128
COMPLEXES OF G-QUADRUPLEX DNA WITH DRUG LIKE
MOLECULES.
Harikrushan Ranpura
, Philip H. Bolton
1178-P
os
B
oard
B129
DETERMINANTS OF SELF AGGREGATION OF H-TEL.
Robert Macgregor
, Yang Li, Bita Zamiri, Rashid Abu-Ghazalah
1179-P
os
B
oard
B130
THE DNA DYNAMICS NEAR NANOPORES AT SUB-
MILLISECOND AND SUB-MICROMETER LEVELS BY THE
ULTRAVIOLET LIGHT SPOT.
Hirohito Yamazaki
, Mutsumi
Tsukahara, Shintaro Ito, Keiko Esashika, Toshiharu Saiki
1180-P
os
B
oard
B131
HYDROXYMETHYLATION OF DNA ALTERS NUCLEOSOMAL
PROPERTIES IN VITRO.
Agnes Mendonca
, Chongli Yuan
1181-P
os
B
oard
B132
DNA DIFFUSION IS DEPENDENT ON IONIC STRENGTH.
Earle Stellwagen
, Nancy C. Stellwagen
1182-P
os
B
oard
B133
THE PRESENCE OF ARGININE REGULATES THE SELECTIVITY
AND BINDING AFFINITY OF LYSINE RECEPTORS.
Jessicca Abron
, Nicholas Pinkin, Marcey Waters
RNA Structure and Dynamics
(Boards B134-B153)
1183-P
os
B
oard
B134
FORCE AND TEMPERATURE DEPENDENT FOLDING OF A
2-BASE-PAIR RNA KISSING COMPLEX.
William T. Stephenson
,
Ashley Colvin, Alan Chen, Pan T.X. Li
1184-P
os
B
oard
B135
A NUCLEOBASE-CENTRIC COARSE-GRAINED MODEL FOR
STRUCTURE PREDICTION OF RNA FRAGMENTS.
Simón Poblete
, Sandro Bottaro, Giovanni Bussi
1185-P
os
B
oard
B136
MAGNESIUM DEPENDENCE OF THE RNA FREE ENERGY
LANDSCAPE.
Ryan L. Hayes
, Jeffrey K. Noel, Ana Mandic, Paul C.
Whitford, Karissa Y. Sanbonmatsu, Udayan Mohanty, José N. Onuchic
1186-P
os
B
oard
B137
AN ADDITIVE CHARMM FORCE FIELD FOR MODIFIED
NUCLEIC ACIDS.
You Xu
, Lennart Nilsson, Alexander D. MacKerrel,
Jr.
1187-P
os
B
oard
B138
OBSERVATION OF A CHANGE IN TWIST OF AN RNA
KISSING COMPLEX USING THE ANGULAR DEPENDENCE OF
FLUORESCENCE RESONANCE ENERGY TRANSFER.
Sheema Rahmanseresht
, Peker Milas, Louis Parrot, Ben D. Gamari, Lori
S. Goldner
1188-P
os
B
oard
B139
KINETIC DESTABILIZATION THROUGH SINGLE POINT
MUTATIONS EMPHASIZES THE CRITICAL ROLE PLAYED BY
COUPLED TERTIARY INTERACTIONS IN THE FOLDING OF
THE AZOARCUS RIBOZYME.
Krishnarjun Sarkar
, Boyang Hua,
Taekjip Ha, Sarah A. Woodson
1189-P
os
B
oard
B140
LOCAL AND GLOBAL FOLDING IN A 58MER RNA REVEALED
BY 2-AMINOPURINE SUBSTITUTIONS AND SPECIFIC NMR
LABELS.
Robb Welty
, Michael J. Rau, Kathleen B. Hall
1190-P
os
B
oard
B141
RNA JUNCTIONS STRUCTURE AND DISTANCE
DETERMINATION VIA ACCURATE SINGLE-MOLECULE HIGH-
PRECISION FRET MEASUREMENTS.
Olga Doroshenko
, Hayk
Vardanyan, Sasha Froebel, Stanislav Kalinin, Simon Sindbert, Oleg
Opanasyuk, Christian Hanke, Sabine Mueller, Holger Gohlke, Claus
A.M. Seidel
1191-P
os
B
oard
B142
RNA PSEUDOKNOT FOLDING ENERGY LANDSCAPE
ELUCIDATED WITH T-JUMP MEASUREMENTS AND KINETIC
MODELING.
Jorjethe Roca
, Yogambigai Velmurugu, Ranjani
Narayanan, Prasanth Narayanan, Serguei Kouznetsov, Anjum Ansari
1192-P
os
B
oard
B143
A BIOPHYSICAL ANALYSIS OF THE CDK5R2 MRNA
G-QUADRUPLEX SECONDARY STRUCTURE AND ITS ROLE IN
THE PATHOGENESIS OF FRAGILE X SYNDROME.
Christian M. Gaetano
, Mihaela R. Mihailescu
1193-P
os
B
oard
B144
A CONSERVED MECHANISM WITHIN THE 5’-LEADER RNA
GENOME AMONG HIV-1 AND SIVCPZ STRAINS DURING
VIRAL GENOME RECOGNITION.
Thao Tran
, Michael F. Summers
1194-P
os
B
oard
B145
SITE-DIRECTED SPIN LABELING EVIDENCE OF THE LEADER-
LINKER INTERACTION IN THE GLYCINE RIBOSWITCH
USING ELECTRON PARAMAGNETIC RESONANCE
SPECTROSCOPY.
Jacqueline M. Esquiaqui
, Eileen M. Sherman, Jing-
Dong Ye, Gail E. Fanucci