79
Biophysical Society 58
th
Annual Meeting, San Francisco, California
M
O
N
D
A
Y
Protein Gymnastics (Boards #B1–#B26)
1271-P
os
B
oard
#B1
TRYPSINOGEN ACTIVATION OBSERVED IN ACCELERATED
MOLECULAR DYNAMICS SIMULATIONS.
Leonardo Boechi
,
J. Andrew McCammon
1272-P
os
B
oard
#B2
CONFORMATIONAL STATES AND DYNAMICS OF NEURONAL
CALCIUM SENSOR SYNAPTOTAGMIN.
Maria Bykhovsksia
1273-P
os
B
oard
#B3
ACTIVE OUTPUT STATE OF THE SYNECHOCOCCUS KAI
CIRCADIAN OSCILLATOR.
Mark Paddock
, Joseph Boyd, Susan Golden
1274-P
os
B
oard
#B4
DETERMINATION OF THE DYNAMIC STRUCTURES OF IGG
ANTIBODY BY INDIVIDUAL-PARTICLE ELECTRONTOMOGRAPHY.
Xing Zhang
, Lei Zhang, Matthew J. Rames, Gang Ren
1275-P
os
B
oard
#B5
PULSED EPR DISTANCE MEASUREMENTS RESOLVE THE
IMPACT OF SITE-SPECIFIC CALMODULIN METHIONINE
OXIDATION. Megan McCarthy, Michael Olenek, Mitch Reuter,
Rebecca Moen, David D. Thomas,
Jennifer C. Klein
1276-P
os
B
oard
#B6
OXIDATIVE STRESS MODULATES BIOACTIVITY OF
LYMPHOTOXIN, BUT NOT TNF, THROUGH SITE-SPECIFIC
OXIDATION OF METHIONINE RESIDUES.
Andrew K. Lewis
,
Jonathan N. Sachs
1277-P
os
B
oard
#B7
ASSESSING DYNAMIC FEATURES OF NF-
κ
B VIA MOLECULAR
DYNAMICS SIMULATIONS AND ELASTIC NETWORK MODEL.
Arzu Uyar
, Vineet Pande, Cameron Mura, J. Andrew McCammon,
Pemra Doruker, Lennart Nilsson
1278-P
os
B
oard
#B8
CONFORMATIONAL PROPERTIES OF KINESIN’S NECK
LINKER ACROSS SPECIES.
Jason Doornenbal
, Intisar Shaheed,
Amanda Miguel, David Ando, Ajay Gopinathan
1279-P
os
B
oard
#B9
CONFORMATIONAL CHANGES IN THE
β
SUBUNITS OF
|F
1
-ATPASE REVEALED BY FRET MEASUREMENTS DURING
THE ROTATION OF THE
γ
SUBUNIT.
Mitsuhiro Sugawa
,
Masaru Kobayashi, Takashi Matsui, Tomoko Masaike,
Takayuki Nishizaka
1280-P
os
B
oard
#B10
EFFECTS OF PHOSPHOMIMETIC MUTATIONS ON THE
PERSISTENCE LENGTH AND THIN FILAMENT BINDING
PROPERTIES OF
α
AND ß-TROPOMYOSIN.
Greg Medlock
,
Worawit Suphamungmee, An-Yue Tu, Xiaochuan (Edward) Li,
Michael Regnier, Michael A. Geeves, William Lehman
1281-P
os
B
oard
#B11
DYNAMICS IN THE TRANSMEMBRANE SEGMENT OF THE
INFLUENZA A M2 PROTON CHANNEL.
Joana Paulino
, Ivan Hung,
Tymothy A. Cross
1282-P
os
B
oard
#B12
ROTATION TRIGGERS NUCLEOTIDE-INDEPENDENT
CONFORMATIONAL TRANSITION OF THE EMPTY BETA
SUBUNIT OF F1-ATPASE.
Jacek Czub
, Milosz Wieczor,
Adrian Tobiszewski, Helmut Grubmueller
1283-P
os
B
oard
#B13
INTERDOMAIN DYNAMICS OF PHOSPHOGLYCERATE KINASE
STUDIED BY SINGLE-MOLECULE FRET AND A MESOSCALE
HYDRODYNAMICS SIMULATION.
Matteo Gabba
, Simon Poblete,
Daryan Kempe, Antonie Schöne, Tina Züchner, Gerhard Gompper,
Jörg Fitter
1284-P
os
B
oard
#B14
minority
affairs
travel
awardee
DETERMINANTS OF FIBRINOLYSIS IN SINGLE FIBRIN FIBERS.
Igal Bucay
, Steven D. Wulfe, Nathan E. Hudson, Tim O’Brien, Mike R. Falvo
1285-P
os
B
oard
#B15
INTERNAL MOTIONS PRIME CIAP1 FOR RAPID ACTIVATION.
Aaron H. Phillips
, Allyn J. Schoeffler, Tsutomu Matsui, Thomas Weiss,
Erin C. Dueber, Wayne J. Fairbrother
1286-P
os
B
oard
#B16
THE FREE ENERGY CONTRIBUTION OF SH3 AND SH2 IN
C-ABL 1B AUTOINHIBITIONMECHANISMVIA A
COMPUTATIONAL STRUCTURE-BASED MODEL.
Ilaria Mereu
,
Ludovico Sutto, Francesco L. Gervasio
1287-P
os
B
oard
#B17
SINGLE MOLECULE OBSERVATION OF F1-ATPASE USING
ARTIFICIAL SUBSTRATE AND AMINO ACID.
Ayako Yukawa
,
Ryu John Iwatate, Rikiya Watanabe, Mako Kamiya, Ryota Iino,
Shigehiko Hayashi, Yasuteru Urano, Hiroyuki Noji
1288-P
os
B
oard
#B18
ACTIVATION CYCLE OF G
α
S PROTEIN ELUCIDATED BY
ELASTIC NETWORK BASED SIMULATION. Minhyeok Kim,
Youngjin Kim, Jaeboong Choi, Byeongsoo Lim,
Moon K. Kim
1289-P
os
B
oard
#B19
THE STATISTICAL CONFORMATION OF A HIGHLY FLEXIBLE
PROTEIN: SMALL ANGLE X-RAY SCATTERING OF S. AUREUS
PROTEIN A.
Jo A. Wiersma Capp
, Terrence G. Oas
1290-P
os
B
oard
#B20
LSD1/COREST - H3-HISTONE MOLECULAR RECOGNITION:
INTER-DOMAIN MOTIONS IN AN ALLOSTERIC NANOSCALE
CLAMP REVEALED BY COMPUTER SIMULATIONS.
Nadeem Ahmad Vellore
, Riccardo Baron
1291-P
os
B
oard
#B21
STRUCTURAL DYNAMICS OF THE HUMAN MRP1 DRUG
TRANSPORTER REVEALED BY FLUORESCENCE RESONANCE
ENERGY TRANSFER.
Surtaj H. Iram
, Seth L. Robia
1292-P
os
B
oard
#B22
PROBING THE OUTER MEMBRANE OF PSEUDOMONAS
AERUGINOSA USING MOLECULAR DYNAMICS
SIMULATIONS.
Jamie Parkin
, Tim Carpenter, Syma Khalid
1293-P
os
B
oard
#B23
UNDERSTANDING COLICIN N IMPORT INTO GRAM
NEGATIVE BACTERIAL CELLS USING SMALL ANGLE
NEUTRON SCATTERING.
Wanatchaporn Arunmanee
,
Alexandra Solovyova, Christopher L. Johnson, Richard K. Heenan,
Jeremy H. Lakey
1294-P
os
B
oard
#B24
AFFINITIES OF SELECTIVE-SEROTONIN REUPTAKE
INHIBITOR (SSRI) FOR HUMAN TRANSPORTERS:
MOLECULAR MODELING AND QUANTUM CHEMICAL
STUDIES.
Krishna Deepak
, Alok Jain, Ramasubbu Sankararamakrishnan
