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4. Based on the

supporting information,

what are the

pros/strengths of the

method?

If additional details on how the supporting

information were generated are provided, it may be

that the method fits a majority (but not all) of the

performance requirements. The results generated

from the in house incurred/spiked food calibration

curve appear to be quite good with respect to

repeatability. In the tested food matrices, the

method also appears to have the specificity

required for a food allergen method.

5. Based on the

supporting information,

what are the

cons/weaknesses of the

method?

As discussed elsewhere in this review, the reporting

units for the method do not match those in the

SMPR, and this issue must be addressed as it affects

whether the method meets many of the

performance requirements. The quantification

strategy that was applied and how an end user

would quantify results needs extensive clarification

(as discussed in previous questions). If the

quantification is to be conducted with a calibration

curve derived from the incurred/spiked foods

produced by the method developer, then the

assessment of method performance must be

conducted on other relevant samples.

6. Any general comments

about the method?

The authors state (on p. 18) that, “For the final

method, two proteins, two unique peptides for

each protein and two MRM transitions for each

peptide, i.e. total of eight MRM transitions, were

used for each allergen commodity to ensure

identification confidence (Table 2).” However, this

statement does not hold true in several cases:

Egg:

- The peptides (EggYolk.Protein_2.Peptide_A and

EggYolk.Protein_2.Peptide_B) listed in Table 1 as

targets for Gal d 5, serum albumin, are not present

in this protein. Instead, these peptides are from

Vitellogenin-2. The other set of peptides from egg

yolk are correctly stated to be from Gal d 6,

Vitellogenin-1, which is another isoform of the

protein.